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Entry version 5 (11 Dec 2019)
Sequence version 1 (18 Jul 2018)
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Protein
Submitted name:

Putative Ig domain-containing protein

Gene

CLV58_13632

Organism
Spirosoma oryzae
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a >Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a >Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative Ig domain-containing proteinImported
<p>This subsection of the <a >Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CLV58_13632Imported
<p>This subsection of the <a >Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSpirosoma oryzaeImported
<p>This subsection of the <a >Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1469603 [NCBI]
<p>This subsection of the <a >Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria ? Bacteroidetes ? Cytophagia ? Cytophagales ? Cytophagaceae ? Spirosoma
<p>This subsection of the <a >Names and taxonomy</a> section is present for entries that are part of a <a >proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000238375 <p>A UniProt <a >proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1?–?18Sequence analysisAdd BLAST18
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501569765319?–?1487Sequence analysisAdd BLAST1469

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a >Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini640?–?723Ig-likeInterPro annotationAdd BLAST84

<p>UniProtKB Keywords constitute a <a >controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.160.20.10?, 1 hit
2.60.40.10?, 4 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006644 Cadg
IPR015919 Cadherin-like_sf
IPR008009 He_PIG
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003599 Ig_sub
IPR006626 PbH1
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05345 He_PIG?, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00736 CADG?, 2 hits
SM00409 IG?, 1 hit
SM00710 PbH1?, 5 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48726 SSF48726?, 1 hit
SSF49313 SSF49313?, 2 hits
SSF51126 SSF51126?, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50835 IG_LIKE?, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a >length</a> and <a >molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a >Sequence</a> section indicates if the <a >canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A2T0RXL5-1 [UniParc]FASTAAdd to basket
? Hide
        10         20         30         40         50
MRPLLLILWL ATVGNALAQP TLTIGVNTRV VGTGDAQFEY GGGSLTNNGS
60 70 80 90 100
LSLAAGQLSA NGPTTYGGSG AAIIANISFG HSTGTSTLNS LLSVTNRATL
110 120 130 140 150
SANTALNANG QLYLRTDQFP NADLVNNGIL TGTVQGLVTR GTVLTGNTPY
160 170 180 190 200
SSLLSTNVSG TSASYQWQSS ADNTTWADVA GATSPTYTAN VSATTYYRCR
210 220 230 240 250
LTTSNSTYNQ NTPALLLNVT GAPPQPIRYV TQNGTGDGSS WASASSDLQA
260 270 280 290 300
MIDALGVEQV WVAGGTFKPS VTGLSNARLA SFVMKNNVAI YGGFFGTEAN
310 320 330 340 350
LTDRPAVNPI LGTPSSTTLS GDIGTPGNNS DNSYHVFYNI DNGLTSTAIL
360 370 380 390 400
DGVVITGGNA SGGSNIATSN AGGGMYIRRS SPTLINCVLA NNSAASGGGG
410 420 430 440 450
GIYINSGNNT TLTNCLLVNN SAQRGGGIFN FSSITLTNCK LINNSATFAD
460 470 480 490 500
GGGLNGGAPT LINCSLINNS AIGNGGGVYG LSPVLVNCSL QANSATNGGG
510 520 530 540 550
IYNNGSPTLT NCSLLSNSAT TGGGIYNNGT PTLANCVLWD NGAGNTIVNN
560 570 580 590 600
SPATLTATYS LFDNTVTGYT GSNNKTTNTS PFASANDVTL APNSPAIDAG
610 620 630 640 650
SNAAYEKGPA TDLAGNPRIF PTGGTIDMGA YEYQGSPVQP VAITSQPPSA
660 670 680 690 700
SSVTTGASVS APASVMGSVS GYQWYKDNLS NAVAGQTSAT LTLTNVQLAD
710 720 730 740 750
AGSYSLVVTG TYNSVTSTAF NLSVSPAATG VPSLSSPANS TTTNGLPTFA
760 770 780 790 800
GSAPGGSTVM VYLSGTASQT LTTTANGGQF SVTPGSPLSS GSYSAYAVAI
810 820 830 840 850
SSGQTTSPAS NTNAFSVDAT APAVTLSASV GNGATTSSQP TSFTAQFSEP
860 870 880 890 900
VTGFDVSKVS VSNGSVNGFS GSGASYSFSV TASTPGQPTN VSIPANVAQD
910 920 930 940 950
GVGNSNTASD SYGFTLIPGE FAIRSVDTRQ CQLVDASRGE YRVSFTPIYS
960 970 980 990 1000
GLNGTPVSLR VINEVDATTA PGPYTIRLYS DNPTVALLAQ QAASPDARFS
1010 1020 1030 1040 1050
YAWLAACQGS VAPNRPPTTT GIPAQQLVQN QPYQLELTRY FADPDGQTLT
1060 1070 1080 1090 1100
YSSSALPAGL TLAGTTISGS PTAPGRTTVR ITALDPGGLS VATDVAMQVD
1110 1120 1130 1140 1150
ATPATTPPAG FTITGVTDLT CVAVTVTERR VSFSPVYSGL DGSSVRFRAV
1160 1170 1180 1190 1200
NEQDFGTTPG PYSLRLYTDN PAVTLEAIQT GQTATYRYNW LSACGNQTPP
1210 1220 1230 1240 1250
TVTNRPPVVV VPIAPQSATV GQGYSFYVPA NTFADPEGEP LSLRTGGLPA
1260 1270 1280 1290 1300
GLSFSASLSA ITGTPTQAGT STIELTASDP AGQSVSLNFT LQVVAGATPP
1310 1320 1330 1340 1350
PPPAGFTITG VGSVTCLSVS NTERRLSFFP QYTGVDGSPI RFRVVNEQDF
1360 1370 1380 1390 1400
GTTPGPYSLR LYTDNPAVTL EAVQTGQTAT YRYNWLAACT SPANSRQAVA
1410 1420 1430 1440 1450
EASSPLSVVV LGNPVVGESV EVLIGGVAGQ AVELNLTDLA GDRLHQQQIP
1460 1470 1480
QASGSARVVV PVPAGQAMTI LKVSTATQQQ TVKLIRH
Length:1,487
Mass (Da):151,049
Last modified:July 18, 2018 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a >Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD08B553A94D9B71C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
PVTE01000036 Genomic DNA Translation: PRY25897.1

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
PVTE01000036 Genomic DNA Translation: PRY25897.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

Gene3Di2.160.20.10?, 1 hit
2.60.40.10?, 4 hits
InterProiView protein in InterPro
IPR006644 Cadg
IPR015919 Cadherin-like_sf
IPR008009 He_PIG
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003599 Ig_sub
IPR006626 PbH1
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
PfamiView protein in Pfam
PF05345 He_PIG?, 1 hit
SMARTiView protein in SMART
SM00736 CADG?, 2 hits
SM00409 IG?, 1 hit
SM00710 PbH1?, 5 hits
SUPFAMiSSF48726 SSF48726?, 1 hit
SSF49313 SSF49313?, 2 hits
SSF51126 SSF51126?, 1 hit
PROSITEiView protein in PROSITE
PS50835 IG_LIKE?, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A2T0RXL5_9BACT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A2T0RXL5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a >canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 18, 2018
Last sequence update: July 18, 2018
Last modified: December 11, 2019
This is version 5 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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