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Entry version 6 (11 Dec 2019)
Sequence version 1 (18 Jul 2018)
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Protein
Submitted name:

Putative repeat protein (TIGR01451 family)/gliding motility-associated-like protein

Gene

CLV58_104195

Organism
Spirosoma oryzae
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a >Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative repeat protein (TIGR01451 family)/gliding motility-associated-like proteinImported
<p>This subsection of the <a >Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CLV58_104195Imported
<p>This subsection of the <a >Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSpirosoma oryzaeImported
<p>This subsection of the <a >Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1469603 [NCBI]
<p>This subsection of the <a >Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria ? Bacteroidetes ? Cytophagia ? Cytophagales ? Cytophagaceae ? Spirosoma
<p>This subsection of the <a >Names and taxonomy</a> section is present for entries that are part of a <a >proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000238375 <p>A UniProt <a >proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a >Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini823?–?925Ig-likeInterPro annotationAdd BLAST103

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni2626?–?2645DisorderedSequence analysisAdd BLAST20
Regioni2948?–?2969DisorderedSequence analysisAdd BLAST22
Regioni3118?–?3146DisorderedSequence analysisAdd BLAST29

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi2948?–?2966PolarSequence analysisAdd BLAST19

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.40.10?, 3 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR026341 Bac_Flav_CTERM
IPR001434 DUF11
IPR007110 Ig-like_dom
IPR013783 Ig-like_fold
IPR033764 Sdr_B

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01345 DUF11?, 3 hits
PF17210 SdrD_B?, 3 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01451 B_ant_repeat?, 3 hits
TIGR04131 Bac_Flav_CTERM?, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50835 IG_LIKE?, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a >length</a> and <a >molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a >Sequence</a> section indicates if the <a >canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A2T0TBN9-1 [UniParc]FASTAAdd to basket
? Hide
        10         20         30         40         50
MNEPGLLNRL YAPTTPRPTD AAHGRLIGDT RMMAMGRALV AWLLRWFTTL
60 70 80 90 100
LPTRRLVIGS IQAGILVLGL LGLSVAGYAQ ATVDLSVHTQ LDKSKPALGD
110 120 130 140 150
VVTYTVVVSN APSLSTATGV VVKNQLPDGG VAYLPSSAIV TRGSGSYDPA
160 170 180 190 200
TGNWTVGTLA SGDSAVLTLK ATVLQRGVWF NIAQVMAVDQ ADLDSTPNNS
210 220 230 240 250
QLYEDDYEGV CFSVPIELYR GDEFTVVVPS GYHKIVWYRN NVDVLTVPAD
260 270 280 290 300
SAVVNSDSSL TIKSPGTYRF VTFNNGCPSS NCCDIEVIQG PYGSLGNFVF
310 320 330 340 350
VDNNKDGIFN AGDTGLDGVK VYLYDQTGTT KLDSTVSANG GKYLFNSLRS
360 370 380 390 400
GTYKVRFSAP GGMQYTQQAP TGTAMGSVAG ADGFTGLYTI DTEKGAGDPG
410 420 430 440 450
RDNMTVNAGF IPKVVPTATL GGIAFVDANG NGIRESEDGG MPGIVVTLFQ
460 470 480 490 500
STTAGVTQIA TTTTTASGAY SFTGIAAGSG YYVKFDTTGL GARGYVVTKP
510 520 530 540 550
GATTNTALDS DAGPNGETAP FSLTAGQVNT TISAGFVPKP ATISSLVFID
560 570 580 590 600
GNSNGQRDAG EGILPGVTVK LYQNGQSSPV QSLTTDVNGA VQFAGLQPGI
610 620 630 640 650
GYYMVFDTTG LRAKGYGLTL YQQGNSATDS DADPVTGRTT SFTLTPGQVL
660 670 680 690 700
TSINAGVKPL CPANLGLTLA SVVPVCPGGT ASLVASTSIS GATVNWYTST
710 720 730 740 750
TSSQPFATVS SGTSVTVAPA QTTIYYVSAR TADGCVSPLQ SATVNVTTVT
760 770 780 790 800
APVLANNTVR NTCPATTVNL TTATISNSDA SLNYEWYTSA TRAAGTLVGN
810 820 830 840 850
LTTANAGTYY VFAKSASGCY SSPATLTAVV VDCGCQTLAG VNAGPAQTSC
860 870 880 890 900
GANPVTLVAS LSGSATSVTW SSNGTGTFSN PTSLTTTFTP SAVDVNNASV
910 920 930 940 950
VISATTNDPD GAGVCVAGTS SLVLTINKCK TDLVVAKQIT TPGSYSLGQT
960 970 980 990 1000
VSYAITVSNA GKSTASSVTV LDKLPASLSF VSANPASDYN AGSGVWTVGS
1010 1020 1030 1040 1050
LTAGAQRSLT IQATIVGTGS VRNTAVVQSP DNDLALGGND TSRVDIQVNG
1060 1070 1080 1090 1100
CTAQAPTIAS SISDICKGSP ATLTATGCTT GTIRWSDGQT GPVVSVIPTV
1110 1120 1130 1140 1150
NTTYTAICVQ SAACASGASN AVSITVRDLQ APTLTPSATS VCPGGQVTLT
1160 1170 1180 1190 1200
ASGCTGGTYQ WSTGSETGAS IVVSPSSRTT YTVQCRIGAC VSAATSTVID
1210 1220 1230 1240 1250
VTETPAKPTI VASTSVVCPG EQVTLTVNGC TGTPMWSNTT ATTGQITVSP
1260 1270 1280 1290 1300
TTGNNTYTVY CKNGACVSPV SDALTIRVTT PAVPTLVAST DSTCSGGKVT
1310 1320 1330 1340 1350
LTANGCEGTV LWSNGQTGAS ITVTPTSTIS YTAQCKFRDC LSATSVAKQI
1360 1370 1380 1390 1400
TVVSPTTPIV KADKLLLCSG ERLTLTAEGC NGTVRWTGTD AIGASINIMP
1410 1420 1430 1440 1450
TETREYYATC QIGTCQSTAS NRLRVTVTTT GTPPTIAAST TATCSGGSVT
1460 1470 1480 1490 1500
LTATGCTGTV VWSDGQTGAT VSVSATAAST QYYAVCRVGT NCASGRSNTI
1510 1520 1530 1540 1550
TITTTSTAAP TIAANTSTIC PGNSVTLTAS GCAGTPVWST GDNTASIVVS
1560 1570 1580 1590 1600
PTVNTNYTVY CQNGSCRSAN STEFLVTVSQ PTPPTISASS TTVVAGGTVT
1610 1620 1630 1640 1650
LTATGCSGDI VWSAAGIDGS NTGASIVVKP EGTQTYYAQC KIGNCVSAAS
1660 1670 1680 1690 1700
AGITVNQSSC TARAGTLLAK AATVCADANG AVVAAVVNGG LVHTDDYSVL
1710 1720 1730 1740 1750
YLLTTGANKT IAQLSPAAAF TVAAQSAGYT INTLVYDGRP SSKNYLDINL
1760 1770 1780 1790 1800
IKTGLTTIAD VSKLIADRSV CADVDLTGAS IAVTYTPAPV LSASTSLTTC
1810 1820 1830 1840 1850
AGSPITLTAQ GCDGGTVTWS DNTVGASITR TPASSFSLTA TCTLNGCTSS
1860 1870 1880 1890 1900
PSQPINVVVG SPQGIPSIVG TKTTICLGET VSLTATGCTG GTLVWSDGQT
1910 1920 1930 1940 1950
TGSVLTAAPT TSTSYRVKCV VGSCESGWSA FTPITVGATV APTVLANGAS
1960 1970 1980 1990 2000
NPTVCAGATV VLTAQGCPDG STIVWSNQLT GTSITVTPTS STTYSAICRT
2010 2020 2030 2040 2050
SASCQSPASA VQTVTVLAKP TQPQVADKSN NCPATVVDLR TAVISAVSTN
2060 2070 2080 2090 2100
GGSFEFYTSP TLSSTALVAN SAAVGTGTYY VVEKAAGGCY SDPAIIRVQI
2110 2120 2130 2140 2150
TTCGSTTTCD PATLLTINAG PDAVVCGAKS YRLQGSVVGT AGKLYWTSTG
2160 2170 2180 2190 2200
NGTFDNPFSA NAIYTASVED ILVGKVTLTL SASAVSATCP VVTDNMILTI
2210 2220 2230 2240 2250
EGPKTTPTIV ASGPLAFCSG DSITLTAPDG ASGYLWSNRA VSKSIVVKTT
2260 2270 2280 2290 2300
GQYTVQTFDA NGCSSPVSAA TQVSVSAPLA TPIVNDIRNN CPALIANLNT
2310 2320 2330 2340 2350
ALSTTAPAGS SYEYRTGAAV TSARVLRPDS VGAGTYYVFL RNSTGCVSSG
2360 2370 2380 2390 2400
APVVVNIVRC QGDTLPVELA LVKTADKTVA KVGDAISYTL RVTNNSQRTA
2410 2420 2430 2440 2450
HNISVRDILP TTVQVQSTTA TSYSVSNGVV TARIDSLIGG ASRSIVIPVS
2460 2470 2480 2490 2500
VIGKGAIVNR ADITYVDERD SNLSNNTSSV TVRDTVISTP GSGTSVLGLA
2510 2520 2530 2540 2550
KAVVGTPTLV GDTTLNVRYR FVATNFGGDT LRNVQITDDL AFAFASARVK
2560 2570 2580 2590 2600
AVKFETIDPN FTLVYQPSYT GGGNTSSLFD STSSYIAPGR SQTFILDVTV
2610 2620 2630 2640 2650
IRRKGDTTMT YRNIASGIAR GMRTLELSTD GSNPDPDGDR NPLNNTSFTV
2660 2670 2680 2690 2700
FRIDTTRQQQ PALGVALAVI NVVDKQDGSY NVTYRATLKN FGNRTLYGVT
2710 2720 2730 2740 2750
LTDTLAKAFP SPTVASIVGS PTVRTGSNLV PNGVYNGTTN LNLLYGTSTL
2760 2770 2780 2790 2800
AAGEQDTITY VINVRPNGIN GIFYTSITGS GATADSVRVY DISNNGFDPN
2810 2820 2830 2840 2850
PLGTTPTPVR FDLTGGVLGV AKAVGTPVEV QSGIYDVPYT IKLVNRGGVA
2860 2870 2880 2890 2900
LNKVQVVDNL SQTFGNGVLI VSNQVSLTAD AGLTVNPAYT GQGRNTSLLI
2910 2920 2930 2940 2950
DSLSTLPVGT SRSVSFVVRV DVRSTDSTRF YNRAIGSGLA NNVAVTDTSA
2960 2970 2980 2990 3000
AGTNDDPNNN LDPRDDSQPT PVVIGPYVGS PHIGLAKAVT DTARQADGSY
3010 3020 3030 3040 3050
NVTYSIVVRN FGNEVLRRVS VVDTLSNVFN TQTGAVYRIV RGPFTTSTGS
3060 3070 3080 3090 3100
ALKLNSDFDG NASPYLVLGD STSTLAVGKV DTIRFVINVT VTTATTATFP
3110 3120 3130 3140 3150
NSAYGTAVAQ SGVVSDRSTN GLVPDVNGNN NPGDSNESQP TPITLSPTNS
3160 3170 3180 3190 3200
SFFIPEGFSP NGDGVNDRFV IRGATGLTIS LEVYNRWGHV VYKNDNYQND
3210 3220 3230 3240
WDGTANTGIL LDGDKGLPDG TYYYIVRTSD GRRFVRYMTI YR
Length:3,242
Mass (Da):331,642
Last modified:July 18, 2018 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a >Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4448E247D17F074E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
PVTE01000004 Genomic DNA Translation: PRY43064.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a >UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
PVTE01000004 Genomic DNA Translation: PRY43064.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

Gene3Di2.60.40.10?, 3 hits
InterProiView protein in InterPro
IPR026341 Bac_Flav_CTERM
IPR001434 DUF11
IPR007110 Ig-like_dom
IPR013783 Ig-like_fold
IPR033764 Sdr_B
PfamiView protein in Pfam
PF01345 DUF11?, 3 hits
PF17210 SdrD_B?, 3 hits
TIGRFAMsiTIGR01451 B_ant_repeat?, 3 hits
TIGR04131 Bac_Flav_CTERM?, 1 hit
PROSITEiView protein in PROSITE
PS50835 IG_LIKE?, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A2T0TBN9_9BACT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A2T0TBN9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a >canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 18, 2018
Last sequence update: July 18, 2018
Last modified: December 11, 2019
This is version 6 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a >controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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